Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yoeB-relE/YoeB-YefM
Location 2335681..2336183 Replicon chromosome
Accession NZ_CP010554
Organism Rugosibacter aromaticivorans strain Ca6

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag PG1C_RS11625 Protein ID WP_202634923.1
Coordinates 2335681..2335935 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name relE Uniprot ID -
Locus tag PG1C_RS11630 Protein ID WP_202634924.1
Coordinates 2335932..2336183 (-) Length 84 a.a.

Genomic Context

PG1C_RS11590PG1C_RS11595PG1C_RS11600PG1C_RS11605PG1C_RS11610PG1C_RS11615PG1C_RS11620PG1C_RS11635PG1C_RS11640PG1C_RS11645PG1C_RS11650PG1C_RS11585PG1C_RS11625PG1C_RS11630
Location: 2332048..2332461 (414 bp)
Type: Others
Protein ID: WP_202634917.1
Location: 2332484..2333143 (660 bp)
Type: Others
Protein ID: WP_202634918.1
Location: 2333342..2333623 (282 bp)
Type: Others
Protein ID: WP_202634919.1
Location: 2333637..2333963 (327 bp)
Type: Others
Protein ID: WP_202634920.1
Location: 2334072..2334305 (234 bp)
Type: Others
Protein ID: WP_202634921.1
Location: 2334287..2334484 (198 bp)
Type: Others
Protein ID: WP_202637050.1
Location: 2334803..2335486 (684 bp)
Type: Others
Protein ID: WP_202634922.1
Location: 2336539..2336796 (258 bp)
Type: Others
Protein ID: WP_202634925.1
Location: 2336800..2337075 (276 bp)
Type: Others
Protein ID: WP_202634926.1
Location: 2337206..2337505 (300 bp)
Type: Others
Protein ID: WP_202634927.1
Location: 2338096..2340488 (2393 bp)
Type: Others
Protein ID: Protein_2289
Location: 2331613..2331957 (345 bp)
Type: Others
Protein ID: WP_202634916.1
Location: 2335681..2335935 (255 bp)
Type: Toxin
Protein ID: WP_202634923.1
Location: 2335932..2336183 (252 bp)
Type: Antitoxin
Protein ID: WP_202634924.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PG1C_RS115852331613..2331957-345WP_202634916.1hypothetical protein-
PG1C_RS115902332048..2332461+414WP_202634917.1hypothetical protein-
PG1C_RS115952332484..2333143+660WP_202634918.1hypothetical protein-
PG1C_RS116002333342..2333623+282WP_202634919.1type II toxin-antitoxin system RelE/ParE family toxin-
PG1C_RS116052333637..2333963+327WP_202634920.1HigA family addiction module antidote protein-
PG1C_RS116102334072..2334305+234WP_202634921.1hypothetical protein-
PG1C_RS116152334287..2334484+198WP_202637050.1type II toxin-antitoxin system HicA family toxin-
PG1C_RS116202334803..2335486+684WP_202634922.1type 1 glutamine amidotransferase domain-containing protein-
PG1C_RS116252335681..2335935-255WP_202634923.1Txe/YoeB family addiction module toxinToxin
PG1C_RS116302335932..2336183-252WP_202634924.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
PG1C_RS116352336539..2336796+258WP_202634925.1BrnT family toxin-
PG1C_RS116402336800..2337075+276WP_202634926.1hypothetical protein-
PG1C_RS116452337206..2337505+300WP_202634927.1GIY-YIG nuclease family protein-
PG1C_RS116502338096..2340488+2393Protein_22895-histidylcysteine sulfoxide synthase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(1-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10323.90 Da        Isoelectric Point: 9.8319

>T52802 WP_202634923.1 NZ_CP010554:c2335935-2335681 [Rugosibacter aromaticivorans]
MKLVFADEAWEDYLYWQKRDKRMVERINKLIRETQREPFTGVGKPEPLKHALSGFWSRRITDEHRMVYRVEDNALLIAQL
RFHY

Download         Length: 255 bp

>T52802 NZ_CP010554:c2335935-2335681 [Rugosibacter aromaticivorans]
ATGAAGCTGGTCTTTGCAGATGAGGCATGGGAAGACTACCTCTATTGGCAAAAGCGAGACAAACGTATGGTTGAACGGAT
TAACAAGTTGATACGCGAGACGCAACGCGAGCCCTTCACCGGAGTTGGAAAGCCTGAACCTTTAAAGCACGCGCTATCAG
GGTTCTGGTCACGTCGCATAACAGACGAGCATCGCATGGTATATCGCGTCGAAGACAATGCACTGTTGATTGCCCAATTG
CGCTTTCATTACTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9075.54 Da        Isoelectric Point: 8.9767

>AT52802 WP_202634924.1 NZ_CP010554:c2336183-2335932 [Rugosibacter aromaticivorans]
MDAITYTTIRANLASAMDRVCNDHEALIITRNGEQAVVMLSLEDYKALEETAYLLRTPANAKRLLTAVGQLNAGKGVARK
LVK

Download         Length: 252 bp

>AT52802 NZ_CP010554:c2336183-2335932 [Rugosibacter aromaticivorans]
ATGGATGCAATTACCTACACTACTATCCGCGCAAACCTCGCTAGCGCTATGGATCGGGTTTGCAACGATCACGAAGCTTT
AATTATCACCCGCAACGGAGAACAGGCGGTGGTGATGCTCTCGCTCGAAGACTACAAGGCGCTTGAAGAAACCGCCTACC
TCTTGCGCACACCCGCCAACGCCAAGCGCCTCTTGACGGCGGTCGGACAACTAAACGCCGGCAAAGGCGTTGCGCGGAAA
TTGGTTAAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References