Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2719434..2719705 | Replicon | chromosome |
| Accession | NZ_CP010445 | ||
| Organism | Escherichia coli K-12 strain K-12 MG1655 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2719472..2719575 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2719434..2719705 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SF31_RS13530 | 2716591..2718030 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SF31_RS13535 | 2718148..2718384 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| SF31_RS13540 | 2718489..2718680 | + | 192 | WP_000457842.1 | YebW family protein | - |
| SF31_RS13545 | 2718681..2719337 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2719434..2719705 | + | 272 | - | - | Antitoxin |
| - | 2719472..2719575 | - | 104 | - | - | Toxin |
| SF31_RS13555 | 2719733..2720074 | - | 342 | WP_000976476.1 | YebY family protein | - |
| SF31_RS13560 | 2720087..2720959 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| SF31_RS13565 | 2720963..2721337 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| SF31_RS13570 | 2721476..2721706 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| SF31_RS13575 | 2721808..2722464 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| SF31_RS13580 | 2722488..2723150 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T52715 NZ_CP010445:c2719575-2719472 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT52715 NZ_CP010445:2719434-2719705 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
