Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 2254853..2255491 Replicon chromosome
Accession NZ_CP010444
Organism Escherichia coli K-12 strain K-12 MG1655

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag SH07_RS11145 Protein ID WP_000813794.1
Coordinates 2254853..2255029 (+) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag SH07_RS11150 Protein ID WP_001270286.1
Coordinates 2255075..2255491 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SH07_RS11125 2250472..2251686 - 1215 WP_001326689.1 BenE family transporter YdcO -
SH07_RS11130 2251739..2252275 + 537 WP_000429155.1 DNA-binding transcriptional regulator SutR -
SH07_RS11135 2252348..2254309 + 1962 WP_001303492.1 23S rRNA 5-hydroxycytidine C2501 synthase -
SH07_RS11140 2254401..2254631 - 231 WP_000494244.1 YncJ family protein -
SH07_RS11145 2254853..2255029 + 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
SH07_RS11150 2255075..2255491 + 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
SH07_RS11155 2255570..2256976 + 1407 WP_000760626.1 PLP-dependent aminotransferase family protein -
SH07_RS11160 2257221..2258366 + 1146 WP_000047424.1 ABC transporter substrate-binding protein -
SH07_RS11165 2258384..2259397 + 1014 WP_000220396.1 ABC transporter ATP-binding protein -
SH07_RS11170 2259398..2260339 + 942 WP_001251304.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(5-57)

Antitoxin

Cro/C1-type helix-turn-helix domain

(91-134)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T52670 WP_000813794.1 NZ_CP010444:2254853-2255029 [Escherichia coli K-12]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T52670 NZ_CP010444:2254853-2255029 [Escherichia coli K-12]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT52670 WP_001270286.1 NZ_CP010444:2255075-2255491 [Escherichia coli K-12]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT52670 NZ_CP010444:2255075-2255491 [Escherichia coli K-12]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
CCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6HPB

Antitoxin

Source ID Structure

References