Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2665862..2666133 | Replicon | chromosome |
| Accession | NZ_CP010443 | ||
| Organism | Escherichia coli K-12 strain K-12 MG1655 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2665900..2666003 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2665862..2666133 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH04_RS13210 | 2663019..2664458 | + | 1440 | Protein_2496 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SH04_RS13215 | 2664576..2664812 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| SH04_RS13220 | 2664917..2665108 | + | 192 | WP_000457842.1 | YebW family protein | - |
| SH04_RS13225 | 2665109..2665765 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2665862..2666133 | + | 272 | - | - | Antitoxin |
| - | 2665900..2666003 | - | 104 | - | - | Toxin |
| SH04_RS13235 | 2666161..2666502 | - | 342 | WP_000976476.1 | YebY family protein | - |
| SH04_RS13240 | 2666515..2667387 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| SH04_RS13245 | 2667391..2667765 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| SH04_RS13250 | 2667904..2668134 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| SH04_RS13255 | 2668236..2668892 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| SH04_RS13260 | 2668916..2669578 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T52632 NZ_CP010443:c2666003-2665900 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT52632 NZ_CP010443:2665862-2666133 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
