Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2680174..2680445 | Replicon | chromosome |
| Accession | NZ_CP010440 | ||
| Organism | Escherichia coli K-12 strain K-12 MG1655 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2680212..2680315 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2680174..2680445 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH08_RS13315 | 2677331..2678770 | + | 1440 | Protein_2522 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SH08_RS13320 | 2678888..2679124 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| SH08_RS13325 | 2679229..2679420 | + | 192 | WP_000457842.1 | YebW family protein | - |
| SH08_RS13330 | 2679421..2680077 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2680174..2680445 | + | 272 | - | - | Antitoxin |
| - | 2680212..2680315 | - | 104 | - | - | Toxin |
| SH08_RS13340 | 2680473..2680814 | - | 342 | WP_000976476.1 | YebY family protein | - |
| SH08_RS13345 | 2680827..2681699 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| SH08_RS13350 | 2681703..2682077 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| SH08_RS13355 | 2682216..2682446 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| SH08_RS13360 | 2682548..2683204 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| SH08_RS13365 | 2683228..2683890 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T52508 NZ_CP010440:c2680315-2680212 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT52508 NZ_CP010440:2680174-2680445 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
