Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2678731..2679002 | Replicon | chromosome |
| Accession | NZ_CP010438 | ||
| Organism | Escherichia coli K-12 strain K-12 MG1655 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2678769..2678872 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2678731..2679002 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH05_RS13320 | 2675888..2677327 | + | 1440 | Protein_2521 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SH05_RS13325 | 2677445..2677681 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| SH05_RS13330 | 2677786..2677977 | + | 192 | WP_000457842.1 | YebW family protein | - |
| SH05_RS13335 | 2677978..2678634 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2678731..2679002 | + | 272 | - | - | Antitoxin |
| - | 2678769..2678872 | - | 104 | - | - | Toxin |
| SH05_RS13345 | 2679030..2679371 | - | 342 | WP_000976476.1 | YebY family protein | - |
| SH05_RS13350 | 2679384..2680256 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| SH05_RS13355 | 2680260..2680634 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| SH05_RS13360 | 2680773..2681003 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| SH05_RS13365 | 2681105..2681761 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| SH05_RS13370 | 2681785..2682447 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T52437 NZ_CP010438:c2678872-2678769 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT52437 NZ_CP010438:2678731-2679002 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
