Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2820407..2820610 | Replicon | chromosome |
| Accession | NZ_CP010384 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain 34399 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2820414..2820517 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2820407..2820610 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LI66_RS13515 | 2815887..2817011 | + | 1125 | WP_039268946.1 | site-specific DNA-methyltransferase | - |
| LI66_RS13520 | 2817008..2817226 | + | 219 | WP_039268947.1 | hypothetical protein | - |
| LI66_RS13525 | 2817223..2817564 | + | 342 | WP_039268948.1 | DUF551 domain-containing protein | - |
| LI66_RS24960 | 2817656..2817874 | + | 219 | WP_039268949.1 | TraR/DksA family transcriptional regulator | - |
| LI66_RS13535 | 2817965..2818234 | + | 270 | WP_039268950.1 | hypothetical protein | - |
| LI66_RS13540 | 2818323..2818853 | + | 531 | WP_039268951.1 | hypothetical protein | - |
| LI66_RS13545 | 2819010..2819282 | + | 273 | WP_039268952.1 | excisionase | - |
| LI66_RS13550 | 2819251..2820336 | + | 1086 | WP_039268953.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2820407..2820610 | + | 204 | - | - | Antitoxin |
| - | 2820414..2820517 | - | 104 | - | - | Toxin |
| LI66_RS13555 | 2820659..2820997 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LI66_RS13560 | 2821014..2821883 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| LI66_RS13565 | 2821885..2822256 | - | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| LI66_RS13570 | 2822394..2822624 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LI66_RS13575 | 2822736..2823386 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| LI66_RS13580 | 2823411..2824073 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2755542..2826856 | 71314 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T52304 NZ_CP010384:c2820517-2820414 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT52304 NZ_CP010384:2820407-2820610 [Enterobacter hormaechei subsp. xiangfangensis]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
