Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2709329..2709530 | Replicon | chromosome |
| Accession | NZ_CP010377 | ||
| Organism | Enterobacter hormaechei subsp. hormaechei strain 34983 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2709334..2709437 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2709329..2709530 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LI64_RS12920 | 2705590..2707038 | + | 1449 | WP_197347173.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LI64_RS12925 | 2707144..2707383 | + | 240 | WP_006811010.1 | YebV family protein | - |
| LI64_RS12930 | 2707418..2708062 | - | 645 | WP_032673898.1 | protein-serine/threonine phosphatase | - |
| LI64_RS12935 | 2708230..2709210 | + | 981 | WP_039274015.1 | VirK/YbjX family protein | - |
| LI64_RS12940 | 2709256..2709453 | + | 198 | WP_000460990.1 | hypothetical protein | - |
| - | 2709329..2709530 | + | 202 | - | - | Antitoxin |
| - | 2709334..2709437 | - | 104 | - | - | Toxin |
| LI64_RS12945 | 2709579..2709917 | - | 339 | WP_006811013.1 | YebY family protein | - |
| LI64_RS12950 | 2709935..2710804 | - | 870 | WP_006811014.1 | copper homeostasis membrane protein CopD | - |
| LI64_RS12955 | 2710806..2711177 | - | 372 | WP_032673899.1 | CopC domain-containing protein YobA | - |
| LI64_RS12960 | 2711315..2711545 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LI64_RS12965 | 2711657..2712307 | + | 651 | WP_039274017.1 | carbon-nitrogen hydrolase family protein | - |
| LI64_RS12970 | 2712332..2712994 | + | 663 | WP_006811017.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T52289 NZ_CP010377:c2709437-2709334 [Enterobacter hormaechei subsp. hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT52289 NZ_CP010377:2709329-2709530 [Enterobacter hormaechei subsp. hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGC
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
