Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1976139..1976410 | Replicon | chromosome |
| Accession | NZ_CP010371 | ||
| Organism | Escherichia coli strain 6409 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1976177..1976280 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1976139..1976410 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RR31_RS09745 | 1973296..1974735 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RR31_RS09750 | 1974853..1975089 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RR31_RS09755 | 1975194..1975385 | + | 192 | WP_000457842.1 | YebW family protein | - |
| RR31_RS09760 | 1975386..1976042 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1976139..1976410 | + | 272 | - | - | Antitoxin |
| - | 1976177..1976280 | - | 104 | - | - | Toxin |
| RR31_RS09770 | 1976438..1976779 | - | 342 | WP_000976476.1 | YebY family protein | - |
| RR31_RS09775 | 1976792..1977664 | - | 873 | WP_039268383.1 | copper homeostasis membrane protein CopD | - |
| RR31_RS09780 | 1977668..1978042 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RR31_RS09785 | 1978181..1978411 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RR31_RS09790 | 1978513..1979169 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RR31_RS09795 | 1979193..1979855 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T52237 NZ_CP010371:c1976280-1976177 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT52237 NZ_CP010371:1976139-1976410 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
