Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/upstrm_HI1419-dnstrm_HI1420
Location 544839..545494 Replicon chromosome
Accession NZ_CP010348
Organism Burkholderia mallei strain Turkey10

Toxin (Protein)


Gene name relE Uniprot ID A0A0H2WL39
Locus tag NW99_RS02870 Protein ID WP_004199884.1
Coordinates 545198..545494 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q63YL3
Locus tag NW99_RS02865 Protein ID WP_004202809.1
Coordinates 544839..545195 (-) Length 119 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NW99_RS02835 540971..541729 + 759 WP_004199892.1 cytochrome c1 -
NW99_RS02840 541822..542433 + 612 WP_004185176.1 glutathione S-transferase N-terminal domain-containing protein -
NW99_RS02845 542503..543024 + 522 WP_004199890.1 ClpXP protease specificity-enhancing factor -
NW99_RS02855 543246..543743 + 498 WP_004199888.1 terminase -
NW99_RS02860 543740..544795 + 1056 WP_004199886.1 phage portal protein -
NW99_RS02865 544839..545195 - 357 WP_004202809.1 putative addiction module antidote protein Antitoxin
NW99_RS02870 545198..545494 - 297 WP_004199884.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NW99_RS02875 546302..547422 + 1121 WP_038802950.1 IS3 family transposase -
NW99_RS02880 547470..548021 + 552 Protein_495 flagellar type III secretion system pore protein FliP -
NW99_RS02885 548047..548319 + 273 WP_004199882.1 flagellar biosynthesis protein FliQ -
NW99_RS02890 548438..549220 + 783 WP_004201278.1 flagellar biosynthetic protein FliR -
NW99_RS02895 549540..549968 - 429 WP_004199881.1 helix-turn-helix domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - fliP / fliQ / fliR 543429..549968 6539


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(8-97)

Antitoxin

Uncharacterized protein HI1420

(16-94)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 10840.66 Da        Isoelectric Point: 10.1723

>T52208 WP_004199884.1 NZ_CP010348:c545494-545198 [Burkholderia mallei]
MFKVLTPPQFDKWLDGLRDPVGSAAINLRIERAKLGNLGQWRAVGDGVNEMKIDVGPGYRAYFVRRGKIIVVVLCGGDKS
TQKKDIKLAKQIAGELED

Download         Length: 297 bp

>T52208 NZ_CP010348:c545494-545198 [Burkholderia mallei]
ATGTTCAAAGTTCTGACGCCCCCCCAGTTTGACAAATGGCTTGACGGGCTTCGCGATCCGGTCGGTAGCGCGGCAATCAA
CCTGCGCATCGAGCGGGCGAAGCTTGGCAATCTCGGCCAGTGGCGCGCAGTCGGCGACGGCGTCAACGAAATGAAGATTG
ATGTGGGGCCGGGATATCGGGCCTATTTCGTGCGGCGCGGAAAAATTATCGTCGTGGTGTTGTGCGGCGGGGACAAGTCG
ACGCAGAAGAAGGACATCAAGCTAGCGAAGCAAATCGCTGGCGAACTGGAGGATTGA

Antitoxin


Download         Length: 119 a.a.        Molecular weight: 12585.41 Da        Isoelectric Point: 9.9470

>AT52208 WP_004202809.1 NZ_CP010348:c545195-544839 [Burkholderia mallei]
MKISELAEFDGSKYLKDEETIRHYLAQAFEDGNPRLIQAALGNVAKARGMTALARESGVKREALYRALSEGGNAEFATIM
KVVGALGLHLTVAPAEPAPVPAPATTRARSRVRTAAHA

Download         Length: 357 bp

>AT52208 NZ_CP010348:c545195-544839 [Burkholderia mallei]
ATGAAAATCAGCGAACTGGCCGAGTTCGACGGCTCGAAGTACCTGAAGGACGAGGAAACGATTCGTCACTACCTGGCGCA
AGCGTTCGAGGATGGAAACCCGCGGCTGATTCAAGCCGCGCTCGGAAACGTCGCGAAAGCGCGCGGCATGACAGCGCTCG
CGCGCGAGTCCGGCGTGAAGCGTGAAGCGCTCTATCGCGCGCTGTCGGAAGGTGGGAACGCGGAATTCGCAACGATCATG
AAAGTTGTGGGCGCGTTGGGGCTGCACCTGACCGTTGCGCCGGCCGAACCTGCGCCGGTGCCCGCGCCGGCAACAACGCG
TGCACGCTCGCGCGTTCGCACGGCTGCGCACGCGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H2WL39

Antitoxin

Source ID Structure
AlphaFold DB A0A3N4G1D3

References