Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2392333..2392604 | Replicon | chromosome |
| Accession | NZ_CP010304 | ||
| Organism | Escherichia coli O157:H7 str. SS52 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2392371..2392474 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2392333..2392604 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SS52_RS12275 | 2389490..2390929 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SS52_RS12280 | 2391047..2391283 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| SS52_RS12285 | 2391388..2391579 | + | 192 | WP_001296140.1 | YebW family protein | - |
| SS52_RS12290 | 2391580..2392236 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2392333..2392604 | + | 272 | - | - | Antitoxin |
| - | 2392371..2392474 | - | 104 | - | - | Toxin |
| SS52_RS12300 | 2392632..2392973 | - | 342 | WP_000976483.1 | YebY family protein | - |
| SS52_RS12305 | 2392986..2393858 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| SS52_RS12310 | 2393862..2394236 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| SS52_RS12315 | 2394375..2394605 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| SS52_RS12320 | 2394707..2395363 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| SS52_RS12325 | 2395387..2396049 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51951 NZ_CP010304:c2392474-2392371 [Escherichia coli O157:H7 str. SS52]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51951 NZ_CP010304:2392333-2392604 [Escherichia coli O157:H7 str. SS52]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
