Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2704410..2704504 Replicon chromosome
Accession NZ_CP010247
Organism Yersinia pestis Pestoides G

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2704410..2704503 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2704410..2704504 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CH43_RS12905 2699973..2700923 + 951 WP_002211090.1 prolyl aminopeptidase -
CH43_RS12910 2700983..2701213 - 231 WP_002211091.1 DNA polymerase III subunit theta -
CH43_RS12915 2701614..2702123 + 510 WP_002211092.1 non-heme ferritin -
CH43_RS12920 2702529..2702915 + 387 WP_002211093.1 CopC domain-containing protein YobA -
CH43_RS12925 2702918..2703802 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
CH43_RS12930 2703899..2704240 + 342 WP_002211095.1 YebY family protein -
- 2704410..2704503 + 94 - - Toxin
- 2704410..2704504 - 95 - - Antitoxin
CH43_RS12940 2704763..2705089 - 327 WP_002211097.1 DUF1493 family protein -
CH43_RS12945 2705083..2705541 - 459 WP_002211098.1 hypothetical protein -
CH43_RS12950 2706073..2707233 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
CH43_RS12955 2707233..2709311 + 2079 WP_011906249.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T51786 NZ_CP010247:2704410-2704503 [Yersinia pestis Pestoides G]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT51786 NZ_CP010247:c2704504-2704410 [Yersinia pestis Pestoides G]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References