Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3907108..3907379 | Replicon | chromosome |
| Accession | NZ_CP010242 | ||
| Organism | Escherichia coli strain S56 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3907146..3907249 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3907108..3907379 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG73_RS20400 | 3904265..3905704 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG73_RS20405 | 3905822..3906058 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG73_RS20410 | 3906163..3906354 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG73_RS20415 | 3906355..3907011 | - | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| - | 3907108..3907379 | + | 272 | - | - | Antitoxin |
| - | 3907146..3907249 | - | 104 | - | - | Toxin |
| RG73_RS20430 | 3907407..3907748 | - | 342 | WP_000976472.1 | YebY family protein | - |
| RG73_RS20435 | 3907761..3908633 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| RG73_RS20440 | 3908637..3909011 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG73_RS20445 | 3909150..3909380 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG73_RS20450 | 3909482..3910138 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG73_RS20455 | 3910162..3910824 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51770 NZ_CP010242:c3907249-3907146 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51770 NZ_CP010242:3907108-3907379 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
