Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3952467..3952738 | Replicon | chromosome |
| Accession | NZ_CP010240 | ||
| Organism | Escherichia coli strain C7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3952505..3952608 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3952467..3952738 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG29_RS21035 | 3949624..3951063 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG29_RS21040 | 3951181..3951417 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG29_RS21045 | 3951522..3951713 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG29_RS21050 | 3951714..3952370 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 3952467..3952738 | + | 272 | - | - | Antitoxin |
| - | 3952505..3952608 | - | 104 | - | - | Toxin |
| RG29_RS21060 | 3952766..3953107 | - | 342 | WP_000976472.1 | YebY family protein | - |
| RG29_RS21065 | 3953120..3953992 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG29_RS21070 | 3953996..3954370 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| RG29_RS21075 | 3954509..3954739 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG29_RS21080 | 3954841..3955497 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG29_RS21085 | 3955521..3956183 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51740 NZ_CP010240:c3952608-3952505 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51740 NZ_CP010240:3952467-3952738 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
