Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4592642..4592913 | Replicon | chromosome |
| Accession | NZ_CP010238 | ||
| Organism | Escherichia coli strain S50 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4592680..4592783 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4592642..4592913 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG72_RS23960 | 4589799..4591238 | + | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG72_RS23965 | 4591356..4591592 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG72_RS23970 | 4591697..4591888 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG72_RS23975 | 4591889..4592545 | - | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| - | 4592642..4592913 | + | 272 | - | - | Antitoxin |
| - | 4592680..4592783 | - | 104 | - | - | Toxin |
| RG72_RS23985 | 4592941..4593282 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG72_RS23990 | 4593295..4594167 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG72_RS23995 | 4594171..4594545 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG72_RS24000 | 4594684..4594914 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG72_RS24005 | 4595016..4595672 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG72_RS24010 | 4595696..4596358 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51698 NZ_CP010238:c4592783-4592680 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51698 NZ_CP010238:4592642-4592913 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
