Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 4193236..4193762 | Replicon | chromosome |
| Accession | NZ_CP010237 | ||
| Organism | Escherichia coli strain S43 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | RG71_RS21930 | Protein ID | WP_000323025.1 |
| Coordinates | 4193475..4193762 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | RG71_RS21925 | Protein ID | WP_000534858.1 |
| Coordinates | 4193236..4193475 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG71_RS21880 | 4188518..4188844 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| RG71_RS21890 | 4189050..4190273 | + | 1224 | WP_073528452.1 | starvation-sensing protein RspA | - |
| RG71_RS21895 | 4190318..4190566 | + | 249 | Protein_3902 | transposase | - |
| RG71_RS21900 | 4190631..4191782 | + | 1152 | WP_001254932.1 | IS30-like element IS30 family transposase | - |
| RG71_RS21910 | 4191792..4192688 | + | 897 | Protein_3904 | IS3 family transposase | - |
| RG71_RS21920 | 4192906..4193211 | - | 306 | WP_073528454.1 | hypothetical protein | - |
| RG71_RS21925 | 4193236..4193475 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| RG71_RS21930 | 4193475..4193762 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| RG71_RS21935 | 4193834..4193989 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RG71_RS21940 | 4194206..4194457 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| RG71_RS21945 | 4194524..4194802 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| RG71_RS21950 | 4194804..4195853 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| RG71_RS21955 | 4195867..4196619 | + | 753 | WP_001047135.1 | antitermination protein | - |
| RG71_RS27430 | 4196897..4196986 | - | 90 | WP_122985911.1 | hypothetical protein | - |
| RG71_RS21960 | 4197041..4197253 | - | 213 | WP_024172454.1 | cold shock-like protein CspF | - |
| RG71_RS21965 | 4197552..4197767 | + | 216 | WP_000066485.1 | cold shock-like protein CspB | - |
| RG71_RS27800 | 4198131..4198301 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| RG71_RS21970 | 4198520..4198734 | + | 215 | Protein_3917 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4179727..4209466 | 29739 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T51681 WP_000323025.1 NZ_CP010237:4193475-4193762 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T51681 NZ_CP010237:4193475-4193762 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT51681 WP_000534858.1 NZ_CP010237:4193236-4193475 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT51681 NZ_CP010237:4193236-4193475 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|