Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3921992..3922263 | Replicon | chromosome |
| Accession | NZ_CP010237 | ||
| Organism | Escherichia coli strain S43 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3922122..3922225 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3921992..3922263 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG71_RS20440 | 3918547..3919209 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG71_RS20445 | 3919233..3919889 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| RG71_RS20450 | 3919991..3920221 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG71_RS20455 | 3920360..3920734 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG71_RS20460 | 3920738..3921610 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| RG71_RS20465 | 3921623..3921964 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3921992..3922263 | - | 272 | - | - | Antitoxin |
| - | 3922122..3922225 | + | 104 | - | - | Toxin |
| RG71_RS20475 | 3922360..3923016 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| RG71_RS20480 | 3923017..3923208 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG71_RS20485 | 3923313..3923549 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG71_RS20490 | 3923667..3925106 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51673 NZ_CP010237:3922122-3922225 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51673 NZ_CP010237:c3922263-3921992 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
