Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1770061..1770332 | Replicon | chromosome |
| Accession | NZ_CP010236 | ||
| Organism | Escherichia coli strain S42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1770099..1770202 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1770061..1770332 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG70_RS09250 | 1767218..1768657 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG70_RS09255 | 1768775..1769011 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG70_RS09260 | 1769116..1769307 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG70_RS09265 | 1769308..1769964 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1770061..1770332 | + | 272 | - | - | Antitoxin |
| - | 1770099..1770202 | - | 104 | - | - | Toxin |
| RG70_RS09275 | 1770360..1770701 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG70_RS09280 | 1770714..1771586 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| RG70_RS09285 | 1771590..1771964 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG70_RS09290 | 1772103..1772333 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG70_RS09295 | 1772435..1773091 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG70_RS09300 | 1773115..1773777 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51643 NZ_CP010236:c1770202-1770099 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51643 NZ_CP010236:1770061-1770332 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
