Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1189577..1189848 | Replicon | chromosome |
| Accession | NZ_CP010231 | ||
| Organism | Escherichia coli strain S30 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1189615..1189718 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1189577..1189848 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG68_RS06230 | 1186734..1188173 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG68_RS06235 | 1188291..1188527 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| RG68_RS06240 | 1188632..1188823 | + | 192 | WP_001338167.1 | YebW family protein | - |
| RG68_RS06245 | 1188824..1189480 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 1189577..1189848 | + | 272 | - | - | Antitoxin |
| - | 1189615..1189718 | - | 104 | - | - | Toxin |
| RG68_RS06255 | 1189876..1190217 | - | 342 | WP_000976472.1 | YebY family protein | - |
| RG68_RS06260 | 1190230..1191102 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| RG68_RS06265 | 1191106..1191480 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG68_RS06270 | 1191619..1191849 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG68_RS06275 | 1191951..1192607 | + | 657 | WP_073546492.1 | carbon-nitrogen hydrolase family protein | - |
| RG68_RS06280 | 1192631..1193293 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51582 NZ_CP010231:c1189718-1189615 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51582 NZ_CP010231:1189577-1189848 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
