Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1388082..1388353 | Replicon | chromosome |
| Accession | NZ_CP010230 | ||
| Organism | Escherichia coli strain S21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1388120..1388223 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1388082..1388353 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG67_RS07210 | 1385239..1386678 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG67_RS07215 | 1386796..1387032 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG67_RS07220 | 1387137..1387328 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG67_RS07225 | 1387329..1387985 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1388082..1388353 | + | 272 | - | - | Antitoxin |
| - | 1388120..1388223 | - | 104 | - | - | Toxin |
| RG67_RS07235 | 1388381..1388722 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG67_RS07240 | 1388735..1389607 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| RG67_RS07245 | 1389611..1389985 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG67_RS07250 | 1390124..1390354 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG67_RS07255 | 1390456..1391112 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG67_RS07260 | 1391136..1391798 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51561 NZ_CP010230:c1388223-1388120 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51561 NZ_CP010230:1388082-1388353 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
