Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3687045..3687316 | Replicon | chromosome |
| Accession | NZ_CP010229 | ||
| Organism | Escherichia coli strain S10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3687175..3687278 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3687045..3687316 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG66_RS18960 | 3683600..3684262 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG66_RS18965 | 3684286..3684942 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG66_RS18970 | 3685044..3685274 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG66_RS18975 | 3685413..3685787 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG66_RS18980 | 3685791..3686663 | + | 873 | WP_057687934.1 | copper homeostasis membrane protein CopD | - |
| RG66_RS18985 | 3686676..3687017 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3687045..3687316 | - | 272 | - | - | Antitoxin |
| - | 3687175..3687278 | + | 104 | - | - | Toxin |
| RG66_RS18995 | 3687413..3688069 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| RG66_RS19000 | 3688070..3688261 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG66_RS19005 | 3688366..3688602 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG66_RS19010 | 3688720..3690159 | - | 1440 | WP_077897026.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51547 NZ_CP010229:3687175-3687278 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51547 NZ_CP010229:c3687316-3687045 [Escherichia coli]
AAAGTAAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTAAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
