Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1371434..1371668 | Replicon | chromosome |
| Accession | NZ_CP010221 | ||
| Organism | Escherichia coli strain M19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1371564..1371667 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1371434..1371668 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG63_RS06965 | 1367989..1368651 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG63_RS06970 | 1368675..1369331 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG63_RS06975 | 1369433..1369663 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG63_RS06980 | 1369802..1370176 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG63_RS06985 | 1370180..1371052 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG63_RS06990 | 1371065..1371406 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1371434..1371668 | - | 235 | - | - | Antitoxin |
| - | 1371564..1371667 | + | 104 | - | - | Toxin |
| RG63_RS07000 | 1371799..1372875 | - | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| RG63_RS07005 | 1372841..1373122 | - | 282 | WP_001311878.1 | excisionase | - |
| RG63_RS07010 | 1373229..1373417 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 1373233..1373411 | + | 179 | NuclAT_0 | - | - |
| - | 1373233..1373411 | + | 179 | NuclAT_0 | - | - |
| - | 1373233..1373411 | + | 179 | NuclAT_0 | - | - |
| - | 1373233..1373411 | + | 179 | NuclAT_0 | - | - |
| RG63_RS07015 | 1373410..1373604 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| RG63_RS07020 | 1373661..1374470 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1365932..1427186 | 61254 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51463 NZ_CP010221:1371564-1371667 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT51463 NZ_CP010221:c1371668-1371434 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
