Detailed information of TA system TA051462

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VagC
• Location: 650260..650885
• Replicon: chromosome
• Accession: NZ_CP010221
• Organism: Escherichia coli strain M19

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: RG63_RS03360
• Protein ID: WP_000911330.1
• Coordinates: 650487..650885 (+)
• Length: 133 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: U9XQV3
• Locus tag: RG63_RS03355
• Protein ID: WP_000450524.1
• Coordinates: 650260..650487 (+)
• Length: 76 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
RG63_RS03325	646063..646533	-	471	WP_001068682.1	thioredoxin-dependent thiol peroxidase	-
RG63_RS03330	646533..647105	-	573	WP_000176187.1	glycine cleavage system transcriptional repressor	-
RG63_RS03335	647251..648129	+	879	WP_001295469.1	4-hydroxy-tetrahydrodipicolinate synthase	-
RG63_RS03340	648146..649180	+	1035	WP_001297320.1	outer membrane protein assembly factor BamC	-
RG63_RS03350	649393..650106	+	714	WP_001295467.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
RG63_RS03355	650260..650487	+	228	WP_000450524.1	toxin-antitoxin system antitoxin VapB	Antitoxin
RG63_RS03360	650487..650885	+	399	WP_000911330.1	tRNA(fMet)-specific endonuclease VapC	Toxin
RG63_RS03365	651032..651895	+	864	Protein_609	neutral zinc metallopeptidase	-
RG63_RS03370	651910..653925	+	2016	WP_000829329.1	tRNA cytosine(34) acetyltransferase TmcA	-
RG63_RS03375	653999..654697	+	699	WP_000679823.1	esterase	-
RG63_RS03380	654807..655007	-	201	WP_000383836.1	YpfN family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (5-125)

Antitoxin

• SpoVT-AbrB domain (7-52)

Sequences

Toxin

Protein

• Length: 133 a.a.
• Molecular weight: 14894.25 Da
• Isoelectric Point: 9.2216

>T51462 WP_000911330.1 NZ_CP010221:650487-650885 [Escherichia coli]
MLKFMLDTNICIFTIKNKPVHVRERFNLNSGRMCISSVTLMELIYGAEKSQMPERNLAVIEGFVSRLVVLDYDSAAATHT
GQIRAELARQGRPVGPFDQMIAGHARSRGLIVVTNNTREFERVAGIRLEDWS

Nucleotide

• Length: 399 bp

>T51462 NZ_CP010221:650487-650885 [Escherichia coli]
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACTATTAAGAATAAACCAGTACATGTCAGAGAGCGGTTTAA
CCTGAATTCTGGCCGGATGTGTATAAGTTCTGTAACATTGATGGAGCTTATCTATGGGGCAGAAAAAAGTCAGATGCCAG
AACGCAATTTGGCGGTTATTGAAGGTTTCGTATCTCGTTTGGTAGTGCTTGATTATGATAGTGCTGCTGCGACGCATACC
GGGCAAATCAGGGCCGAGCTTGCCCGGCAGGGAAGGCCTGTTGGACCTTTTGACCAGATGATAGCGGGACATGCTCGCAG
TCGCGGTTTGATTGTGGTTACCAACAATACCCGAGAGTTTGAGCGAGTGGCGGGAATCAGACTAGAAGACTGGAGCTAA

Antitoxin

Protein

• Length: 76 a.a.
• Molecular weight: 8498.61 Da
• Isoelectric Point: 4.3867

>AT51462 WP_000450524.1 NZ_CP010221:650260-650487 [Escherichia coli]
METTVFLSNRSQAVRLPKAVALPEDVKKVEIIAIGRTRIITPAGESWDSWFDGENVSADFMDIRDQPAMQERESF

Nucleotide

• Length: 228 bp

>AT51462 NZ_CP010221:650260-650487 [Escherichia coli]
ATGGAAACTACTGTATTTTTAAGTAATCGCAGTCAGGCCGTCAGATTACCGAAAGCGGTCGCTCTGCCAGAAGACGTTAA
GAAAGTAGAAATTATTGCGATTGGTCGTACAAGAATCATCACTCCCGCCGGTGAGTCCTGGGACAGTTGGTTTGATGGCG
AAAATGTGAGTGCGGATTTTATGGATATCCGTGATCAACCCGCAATGCAGGAAAGGGAATCATTTTGA

Structures

Antitoxin

• AlphaFold DB: A0A829CM33