Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 693638..693909 Replicon chromosome
Accession NZ_CP010219
Organism Escherichia coli strain M18

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 693676..693779 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 693638..693909 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RG62_RS03595 690795..692234 + 1440 WP_001307251.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
RG62_RS03600 692352..692588 + 237 WP_001295499.1 DUF1480 family protein -
RG62_RS03605 692693..692884 + 192 WP_001296140.1 YebW family protein -
RG62_RS03610 692885..693541 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 693638..693909 + 272 - - Antitoxin
- 693676..693779 - 104 - - Toxin
RG62_RS03620 693937..694278 - 342 WP_000976472.1 YebY family protein -
RG62_RS03625 694291..695163 - 873 WP_000879282.1 copper homeostasis membrane protein CopD -
RG62_RS03630 695167..695541 - 375 WP_000204699.1 CopC domain-containing protein YobA -
RG62_RS03635 695680..695910 + 231 WP_000916763.1 DNA polymerase III subunit theta -
RG62_RS03640 696012..696668 + 657 WP_000011652.1 carbon-nitrogen hydrolase family protein -
RG62_RS03645 696692..697354 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T51433 NZ_CP010219:c693779-693676 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT51433 NZ_CP010219:693638-693909 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References