Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 411980..412251 | Replicon | chromosome |
| Accession | NZ_CP010200 | ||
| Organism | Escherichia coli strain M10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 412018..412121 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 411980..412251 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG59_RS02120 | 409137..410576 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG59_RS02125 | 410694..410930 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG59_RS02130 | 411035..411226 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG59_RS02135 | 411227..411883 | - | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| - | 411980..412251 | + | 272 | - | - | Antitoxin |
| - | 412018..412121 | - | 104 | - | - | Toxin |
| RG59_RS02150 | 412279..412620 | - | 342 | WP_000976472.1 | YebY family protein | - |
| RG59_RS02155 | 412633..413505 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| RG59_RS02160 | 413509..413883 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG59_RS02165 | 414022..414252 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG59_RS02170 | 414354..415010 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG59_RS02175 | 415034..415696 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51325 NZ_CP010200:c412121-412018 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51325 NZ_CP010200:411980-412251 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
