Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3517992..3518263 | Replicon | chromosome |
| Accession | NZ_CP010191 | ||
| Organism | Escherichia coli strain M8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3518122..3518225 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3517992..3518263 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG57_RS18105 | 3514547..3515209 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG57_RS18110 | 3515233..3515889 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG57_RS18115 | 3515991..3516221 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG57_RS18120 | 3516360..3516734 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG57_RS18125 | 3516738..3517610 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| RG57_RS18130 | 3517623..3517964 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3517992..3518263 | - | 272 | - | - | Antitoxin |
| - | 3518122..3518225 | + | 104 | - | - | Toxin |
| RG57_RS18140 | 3518360..3519016 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| RG57_RS18145 | 3519017..3519208 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG57_RS18150 | 3519313..3519549 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG57_RS18155 | 3519667..3521106 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51277 NZ_CP010191:3518122-3518225 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51277 NZ_CP010191:c3518263-3517992 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
