Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 692415..692686 Replicon chromosome
Accession NZ_CP010180
Organism Escherichia coli strain M1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 692453..692556 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 692415..692686 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RG54_RS03585 689572..691011 + 1440 WP_001307251.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
RG54_RS03590 691129..691365 + 237 WP_001295499.1 DUF1480 family protein -
RG54_RS03595 691470..691661 + 192 WP_001296140.1 YebW family protein -
RG54_RS03600 691662..692318 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 692415..692686 + 272 - - Antitoxin
- 692453..692556 - 104 - - Toxin
RG54_RS03610 692714..693055 - 342 WP_000976472.1 YebY family protein -
RG54_RS03615 693068..693940 - 873 WP_000879282.1 copper homeostasis membrane protein CopD -
RG54_RS03620 693944..694318 - 375 WP_000204699.1 CopC domain-containing protein YobA -
RG54_RS03625 694457..694687 + 231 WP_000916763.1 DNA polymerase III subunit theta -
RG54_RS03630 694789..695445 + 657 WP_000011652.1 carbon-nitrogen hydrolase family protein -
RG54_RS03635 695469..696131 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T51189 NZ_CP010180:c692556-692453 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT51189 NZ_CP010180:692415-692686 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References