Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1794629..1794900 | Replicon | chromosome |
| Accession | NZ_CP010176 | ||
| Organism | Escherichia coli strain H10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1794667..1794770 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1794629..1794900 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG51_RS09335 | 1791786..1793225 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG51_RS09340 | 1793343..1793579 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG51_RS09345 | 1793684..1793875 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG51_RS09350 | 1793876..1794532 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 1794629..1794900 | + | 272 | - | - | Antitoxin |
| - | 1794667..1794770 | - | 104 | - | - | Toxin |
| RG51_RS09360 | 1794928..1795269 | - | 342 | WP_000976472.1 | YebY family protein | - |
| RG51_RS09365 | 1795282..1796154 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG51_RS09370 | 1796158..1796532 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| RG51_RS09375 | 1796671..1796901 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG51_RS09380 | 1797003..1797659 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG51_RS09385 | 1797683..1798345 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51115 NZ_CP010176:c1794770-1794667 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51115 NZ_CP010176:1794629-1794900 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
