Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 117600..117871 | Replicon | chromosome |
| Accession | NZ_CP010171 | ||
| Organism | Escherichia coli strain H7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 117730..117833 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 117600..117871 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG49_RS00725 | 114155..114817 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| RG49_RS00730 | 114841..115497 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG49_RS00735 | 115599..115829 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG49_RS00740 | 115968..116342 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG49_RS00745 | 116346..117218 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| RG49_RS00750 | 117231..117572 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 117600..117871 | - | 272 | - | - | Antitoxin |
| - | 117730..117833 | + | 104 | - | - | Toxin |
| RG49_RS00760 | 117968..118624 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| RG49_RS00765 | 118625..118816 | - | 192 | WP_001338167.1 | YebW family protein | - |
| RG49_RS00770 | 118921..119157 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| RG49_RS00775 | 119275..120714 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51056 NZ_CP010171:117730-117833 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51056 NZ_CP010171:c117871-117600 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
