Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2208064..2208332 | Replicon | chromosome |
| Accession | NZ_CP010170 | ||
| Organism | Escherichia coli strain H6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2208191..2208294 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2208064..2208332 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG48_RS11455 | 2204617..2205279 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG48_RS11460 | 2205303..2205959 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| RG48_RS11465 | 2206061..2206291 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG48_RS11470 | 2206430..2206804 | + | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| RG48_RS11475 | 2206808..2207680 | + | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| RG48_RS11480 | 2207693..2208034 | + | 342 | WP_001515445.1 | YebY family protein | - |
| - | 2208064..2208332 | - | 269 | - | - | Antitoxin |
| - | 2208191..2208294 | + | 104 | - | - | Toxin |
| RG48_RS11490 | 2208429..2209085 | + | 657 | WP_001515444.1 | protein-serine/threonine phosphatase | - |
| RG48_RS11495 | 2209086..2209277 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG48_RS11500 | 2209382..2209618 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG48_RS11505 | 2209736..2211175 | - | 1440 | WP_024189843.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51043 NZ_CP010170:2208191-2208294 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT51043 NZ_CP010170:c2208332-2208064 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
