Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3982258..3982526 | Replicon | chromosome |
| Accession | NZ_CP010169 | ||
| Organism | Escherichia coli strain H5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3982296..3982399 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3982258..3982526 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG47_RS20660 | 3979415..3980854 | + | 1440 | WP_024189843.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG47_RS20665 | 3980972..3981208 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG47_RS20670 | 3981313..3981504 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG47_RS20675 | 3981505..3982161 | - | 657 | WP_001515444.1 | protein-serine/threonine phosphatase | - |
| - | 3982258..3982526 | + | 269 | - | - | Antitoxin |
| - | 3982296..3982399 | - | 104 | - | - | Toxin |
| RG47_RS20685 | 3982556..3982897 | - | 342 | WP_001515445.1 | YebY family protein | - |
| RG47_RS20690 | 3982910..3983782 | - | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| RG47_RS20695 | 3983786..3984160 | - | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| RG47_RS20700 | 3984299..3984529 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG47_RS20705 | 3984631..3985287 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| RG47_RS20710 | 3985311..3985973 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51029 NZ_CP010169:c3982399-3982296 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT51029 NZ_CP010169:3982258-3982526 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
