Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3098920..3099191 | Replicon | chromosome |
| Accession | NZ_CP010167 | ||
| Organism | Escherichia coli strain H3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3098958..3099061 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3098920..3099191 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG46_RS15965 | 3096077..3097516 | + | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG46_RS15970 | 3097634..3097870 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG46_RS15975 | 3097975..3098166 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG46_RS15980 | 3098167..3098823 | - | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| - | 3098920..3099191 | + | 272 | - | - | Antitoxin |
| - | 3098958..3099061 | - | 104 | - | - | Toxin |
| RG46_RS15990 | 3099219..3099560 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG46_RS15995 | 3099573..3100445 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| RG46_RS16000 | 3100449..3100823 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG46_RS16005 | 3100962..3101192 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG46_RS16010 | 3101294..3101950 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG46_RS16015 | 3101974..3102636 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51004 NZ_CP010167:c3099061-3098958 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51004 NZ_CP010167:3098920-3099191 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
