Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2173478..2173749 | Replicon | chromosome |
| Accession | NZ_CP010163 | ||
| Organism | Escherichia coli strain H2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2173608..2173711 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2173478..2173749 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG45_RS11730 | 2170033..2170695 | - | 663 | WP_073511840.1 | exodeoxyribonuclease X | - |
| RG45_RS11735 | 2170719..2171375 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| RG45_RS11740 | 2171477..2171707 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG45_RS11745 | 2171846..2172220 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| RG45_RS11750 | 2172224..2173096 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| RG45_RS11755 | 2173109..2173450 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2173478..2173749 | - | 272 | - | - | Antitoxin |
| - | 2173608..2173711 | + | 104 | - | - | Toxin |
| RG45_RS11765 | 2173846..2174502 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| RG45_RS11770 | 2174503..2174694 | - | 192 | WP_001338167.1 | YebW family protein | - |
| RG45_RS11775 | 2174799..2175035 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| RG45_RS11780 | 2175153..2176592 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2165292..2176598 | 11306 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50975 NZ_CP010163:2173608-2173711 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50975 NZ_CP010163:c2173749-2173478 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
