Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 368170..368441 | Replicon | chromosome |
| Accession | NZ_CP010160 | ||
| Organism | Escherichia coli strain H1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 368208..368311 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 368170..368441 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG44_RS02050 | 365327..366766 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG44_RS02055 | 366884..367120 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| RG44_RS02060 | 367225..367416 | + | 192 | WP_001338167.1 | YebW family protein | - |
| RG44_RS02065 | 367417..368073 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 368170..368441 | + | 272 | - | - | Antitoxin |
| - | 368208..368311 | - | 104 | - | - | Toxin |
| RG44_RS02075 | 368469..368810 | - | 342 | WP_000976472.1 | YebY family protein | - |
| RG44_RS02080 | 368823..369695 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| RG44_RS02085 | 369699..370073 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG44_RS02090 | 370212..370442 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG44_RS02095 | 370544..371200 | + | 657 | WP_073544597.1 | carbon-nitrogen hydrolase family protein | - |
| RG44_RS02100 | 371224..371886 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50949 NZ_CP010160:c368311-368208 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50949 NZ_CP010160:368170-368441 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
