Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2182611..2182879 | Replicon | chromosome |
| Accession | NZ_CP010157 | ||
| Organism | Escherichia coli strain D10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2182739..2182841 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2182611..2182879 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG43_RS11370 | 2179164..2179826 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG43_RS11375 | 2179850..2180506 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein | - |
| RG43_RS11380 | 2180608..2180838 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| RG43_RS11385 | 2180977..2181351 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG43_RS11390 | 2181355..2182227 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| RG43_RS11395 | 2182240..2182581 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2182611..2182879 | - | 269 | - | - | Antitoxin |
| - | 2182739..2182841 | + | 103 | - | - | Toxin |
| RG43_RS11410 | 2182976..2183632 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| RG43_RS11415 | 2183633..2183824 | - | 192 | WP_001317886.1 | YebW family protein | - |
| RG43_RS11420 | 2183929..2184165 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG43_RS11425 | 2184283..2185722 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2143022..2199430 | 56408 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T50919 NZ_CP010157:2182739-2182841 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT50919 NZ_CP010157:c2182879-2182611 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
