Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2514007..2514278 | Replicon | chromosome |
| Accession | NZ_CP010152 | ||
| Organism | Escherichia coli strain D9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2514045..2514148 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2514007..2514278 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG42_RS13215 | 2511164..2512603 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG42_RS13220 | 2512721..2512957 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG42_RS13225 | 2513062..2513253 | + | 192 | WP_000457842.1 | YebW family protein | - |
| RG42_RS13230 | 2513254..2513910 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2514007..2514278 | + | 272 | - | - | Antitoxin |
| - | 2514045..2514148 | - | 104 | - | - | Toxin |
| RG42_RS13240 | 2514306..2514647 | - | 342 | WP_000976476.1 | YebY family protein | - |
| RG42_RS13245 | 2514660..2515532 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| RG42_RS13250 | 2515536..2515910 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG42_RS13255 | 2516049..2516279 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG42_RS13260 | 2516381..2517037 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG42_RS13265 | 2517061..2517723 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50892 NZ_CP010152:c2514148-2514045 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50892 NZ_CP010152:2514007-2514278 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
