Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1294988..1295256 | Replicon | chromosome |
| Accession | NZ_CP010151 | ||
| Organism | Escherichia coli strain D8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1295116..1295218 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1294988..1295256 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG41_RS06385 | 1291542..1292204 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG41_RS06390 | 1292227..1292883 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| RG41_RS06395 | 1292985..1293215 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG41_RS06400 | 1293354..1293728 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG41_RS06405 | 1293732..1294604 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| RG41_RS06410 | 1294617..1294958 | + | 342 | WP_000977376.1 | YebY family protein | - |
| - | 1294988..1295256 | - | 269 | - | - | Antitoxin |
| - | 1295116..1295218 | + | 103 | - | - | Toxin |
| RG41_RS06425 | 1295353..1296009 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| RG41_RS06430 | 1296010..1296201 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG41_RS06435 | 1296306..1296542 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG41_RS06440 | 1296660..1298099 | - | 1440 | WP_001467894.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T50856 NZ_CP010151:1295116-1295218 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT50856 NZ_CP010151:c1295256-1294988 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
