Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4174225..4174496 | Replicon | chromosome |
| Accession | NZ_CP010148 | ||
| Organism | Escherichia coli strain D6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4174355..4174458 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4174225..4174496 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG39_RS21435 | 4170780..4171442 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG39_RS21440 | 4171466..4172122 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG39_RS21445 | 4172224..4172454 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG39_RS21450 | 4172593..4172967 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG39_RS21455 | 4172971..4173843 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| RG39_RS21460 | 4173856..4174197 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4174225..4174496 | - | 272 | - | - | Antitoxin |
| - | 4174355..4174458 | + | 104 | - | - | Toxin |
| RG39_RS21475 | 4174593..4175249 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| RG39_RS21480 | 4175250..4175441 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG39_RS21485 | 4175546..4175782 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG39_RS21490 | 4175900..4177339 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50812 NZ_CP010148:4174355-4174458 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50812 NZ_CP010148:c4174496-4174225 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
