Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1214484..1214755 | Replicon | chromosome |
| Accession | NZ_CP010145 | ||
| Organism | Escherichia coli strain D5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1214522..1214625 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1214484..1214755 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG38_RS06390 | 1211641..1213080 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG38_RS06395 | 1213198..1213434 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG38_RS06400 | 1213539..1213730 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG38_RS06405 | 1213731..1214387 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1214484..1214755 | + | 272 | - | - | Antitoxin |
| - | 1214522..1214625 | - | 104 | - | - | Toxin |
| RG38_RS06415 | 1214783..1215124 | - | 342 | WP_000976472.1 | YebY family protein | - |
| RG38_RS06420 | 1215137..1216009 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| RG38_RS06425 | 1216013..1216387 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG38_RS06430 | 1216526..1216756 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG38_RS06435 | 1216858..1217514 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG38_RS06440 | 1217538..1218200 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50769 NZ_CP010145:c1214625-1214522 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50769 NZ_CP010145:1214484-1214755 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
