Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2346284..2346555 | Replicon | chromosome |
| Accession | NZ_CP010143 | ||
| Organism | Escherichia coli strain D4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2346322..2346425 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2346284..2346555 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG37_RS12370 | 2343441..2344880 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG37_RS12375 | 2344998..2345234 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG37_RS12380 | 2345339..2345530 | + | 192 | WP_000457842.1 | YebW family protein | - |
| RG37_RS12385 | 2345531..2346187 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2346284..2346555 | + | 272 | - | - | Antitoxin |
| - | 2346322..2346425 | - | 104 | - | - | Toxin |
| RG37_RS12395 | 2346583..2346924 | - | 342 | WP_000976476.1 | YebY family protein | - |
| RG37_RS12400 | 2346937..2347809 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| RG37_RS12405 | 2347813..2348187 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG37_RS12410 | 2348326..2348556 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG37_RS12415 | 2348658..2349314 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG37_RS12420 | 2349338..2350000 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50748 NZ_CP010143:c2346425-2346322 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50748 NZ_CP010143:2346284-2346555 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
