Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2505671..2505942 | Replicon | chromosome |
| Accession | NZ_CP010140 | ||
| Organism | Escherichia coli strain D3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2505709..2505812 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2505671..2505942 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG36_RS13225 | 2502828..2504267 | + | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG36_RS13230 | 2504385..2504621 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG36_RS13235 | 2504726..2504917 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG36_RS13240 | 2504918..2505574 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2505671..2505942 | + | 272 | - | - | Antitoxin |
| - | 2505709..2505812 | - | 104 | - | - | Toxin |
| RG36_RS13250 | 2505970..2506311 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG36_RS13255 | 2506324..2507196 | - | 873 | WP_000879334.1 | copper homeostasis membrane protein CopD | - |
| RG36_RS13260 | 2507200..2507574 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG36_RS13265 | 2507713..2507943 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG36_RS13270 | 2508045..2508701 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG36_RS13275 | 2508725..2509387 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50706 NZ_CP010140:c2505812-2505709 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGGCCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGGCCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50706 NZ_CP010140:2505671-2505942 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGCCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGCCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
