Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2207981..2208252 | Replicon | chromosome |
| Accession | NZ_CP010137 | ||
| Organism | Escherichia coli strain D2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2208111..2208214 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2207981..2208252 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG35_RS11295 | 2204537..2205199 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG35_RS11300 | 2205223..2205879 | - | 657 | WP_073544200.1 | carbon-nitrogen hydrolase family protein | - |
| RG35_RS11305 | 2205981..2206211 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG35_RS11310 | 2206350..2206724 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG35_RS11315 | 2206728..2207600 | + | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| RG35_RS11320 | 2207613..2207954 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2207981..2208252 | - | 272 | - | - | Antitoxin |
| - | 2208111..2208214 | + | 104 | - | - | Toxin |
| RG35_RS11330 | 2208349..2209005 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| RG35_RS11335 | 2209006..2209197 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG35_RS11340 | 2209302..2209538 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG35_RS11345 | 2209656..2211095 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50675 NZ_CP010137:2208111-2208214 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50675 NZ_CP010137:c2208252-2207981 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
