Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 5043030..5043668 Replicon chromosome
Accession NZ_CP010133
Organism Escherichia coli strain C11

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag RG33_RS26115 Protein ID WP_000813794.1
Coordinates 5043492..5043668 (-) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag RG33_RS26110 Protein ID WP_001270286.1
Coordinates 5043030..5043446 (-) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RG33_RS26090 5038182..5039123 - 942 WP_001251313.1 ABC transporter permease -
RG33_RS26095 5039124..5040137 - 1014 WP_001542893.1 ABC transporter ATP-binding protein -
RG33_RS26100 5040155..5041300 - 1146 WP_000047424.1 ABC transporter substrate-binding protein -
RG33_RS26105 5041545..5042951 - 1407 WP_040089859.1 PLP-dependent aminotransferase family protein -
RG33_RS26110 5043030..5043446 - 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
RG33_RS26115 5043492..5043668 - 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
RG33_RS26120 5043890..5044120 + 231 WP_000494244.1 YncJ family protein -
RG33_RS26125 5044212..5046173 - 1962 WP_001442195.1 23S rRNA 5-hydroxycytidine C2501 synthase -
RG33_RS26130 5046246..5046782 - 537 WP_000429155.1 DNA-binding transcriptional regulator SutR -
RG33_RS26135 5046835..5048049 + 1215 WP_071609973.1 BenE family transporter YdcO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 5048089..5049237 1148


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(5-57)

Antitoxin

Cro/C1-type helix-turn-helix domain

(91-134)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T50640 WP_000813794.1 NZ_CP010133:c5043668-5043492 [Escherichia coli]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T50640 NZ_CP010133:c5043668-5043492 [Escherichia coli]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT50640 WP_001270286.1 NZ_CP010133:c5043446-5043030 [Escherichia coli]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT50640 NZ_CP010133:c5043446-5043030 [Escherichia coli]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
GCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCGTTACCTTCGCCATTAAATAGTCATGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAAGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGAT
TACTCGCCTATTTAATTTGCACCATGCGACAAAAATCGACGCCGTCCAGCTTGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6HPB

Antitoxin

Source ID Structure

References