Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4590128..4590399 | Replicon | chromosome |
| Accession | NZ_CP010133 | ||
| Organism | Escherichia coli strain C11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4590258..4590361 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4590128..4590399 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG33_RS23655 | 4586683..4587345 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG33_RS23660 | 4587369..4588025 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG33_RS23665 | 4588127..4588357 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG33_RS23670 | 4588496..4588870 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG33_RS23675 | 4588874..4589746 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG33_RS23680 | 4589759..4590100 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4590128..4590399 | - | 272 | - | - | Antitoxin |
| - | 4590258..4590361 | + | 104 | - | - | Toxin |
| RG33_RS23690 | 4590496..4591152 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| RG33_RS23695 | 4591153..4591344 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG33_RS23700 | 4591449..4591685 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG33_RS23705 | 4591803..4593242 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50630 NZ_CP010133:4590258-4590361 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50630 NZ_CP010133:c4590399-4590128 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
