Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2583515..2583786 | Replicon | chromosome |
| Accession | NZ_CP010122 | ||
| Organism | Escherichia coli strain C5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2583645..2583748 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2583515..2583786 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG28_RS13405 | 2580070..2580732 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG28_RS13410 | 2580756..2581412 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG28_RS13415 | 2581514..2581744 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG28_RS13420 | 2581883..2582257 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG28_RS13425 | 2582261..2583133 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG28_RS13430 | 2583146..2583487 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2583515..2583786 | - | 272 | - | - | Antitoxin |
| - | 2583645..2583748 | + | 104 | - | - | Toxin |
| RG28_RS13440 | 2583883..2584539 | + | 657 | WP_021565248.1 | protein-serine/threonine phosphatase | - |
| RG28_RS13445 | 2584540..2584731 | - | 192 | WP_000457842.1 | YebW family protein | - |
| RG28_RS13450 | 2584836..2585072 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG28_RS13455 | 2585190..2586629 | - | 1440 | WP_024235159.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50489 NZ_CP010122:2583645-2583748 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50489 NZ_CP010122:c2583786-2583515 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
