Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2392776..2393047 | Replicon | chromosome |
| Accession | NZ_CP010121 | ||
| Organism | Escherichia coli strain C4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2392906..2393009 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2392776..2393047 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG27_RS12240 | 2389331..2389993 | - | 663 | WP_073461879.1 | exodeoxyribonuclease X | - |
| RG27_RS12245 | 2390017..2390673 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| RG27_RS12250 | 2390775..2391005 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG27_RS12255 | 2391144..2391518 | + | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| RG27_RS12260 | 2391522..2392394 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| RG27_RS12265 | 2392407..2392748 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2392776..2393047 | - | 272 | - | - | Antitoxin |
| - | 2392906..2393009 | + | 104 | - | - | Toxin |
| RG27_RS12280 | 2393144..2393800 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| RG27_RS12285 | 2393801..2393992 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG27_RS12290 | 2394097..2394333 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG27_RS12295 | 2394451..2395890 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2385467..2395896 | 10429 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50458 NZ_CP010121:2392906-2393009 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50458 NZ_CP010121:c2393047-2392776 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
