Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3141983..3142254 | Replicon | chromosome |
| Accession | NZ_CP010119 | ||
| Organism | Escherichia coli strain C3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3142113..3142216 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3141983..3142254 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG26_RS16605 | 3138538..3139200 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG26_RS16610 | 3139224..3139880 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG26_RS16615 | 3139982..3140212 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG26_RS16620 | 3140351..3140725 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| RG26_RS16625 | 3140729..3141601 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG26_RS16630 | 3141614..3141955 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3141983..3142254 | - | 272 | - | - | Antitoxin |
| - | 3142113..3142216 | + | 104 | - | - | Toxin |
| RG26_RS16640 | 3142351..3143007 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| RG26_RS16645 | 3143008..3143199 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG26_RS16650 | 3143304..3143540 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG26_RS16655 | 3143658..3145097 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50422 NZ_CP010119:3142113-3142216 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50422 NZ_CP010119:c3142254-3141983 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
