Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 823344..823615 Replicon chromosome
Accession NZ_CP010117
Organism Escherichia coli strain C2

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 823474..823577 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 823344..823615 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RG25_RS04205 819899..820561 - 663 WP_000944256.1 exodeoxyribonuclease X -
RG25_RS04210 820585..821241 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
RG25_RS04215 821343..821573 - 231 WP_000916763.1 DNA polymerase III subunit theta -
RG25_RS04220 821712..822086 + 375 WP_000204700.1 CopC domain-containing protein YobA -
RG25_RS04225 822090..822962 + 873 WP_000879280.1 copper homeostasis membrane protein CopD -
RG25_RS04230 822975..823316 + 342 WP_000976472.1 YebY family protein -
- 823344..823615 - 272 - - Antitoxin
- 823474..823577 + 104 - - Toxin
RG25_RS04240 823712..824368 + 657 WP_000812712.1 protein-serine/threonine phosphatase -
RG25_RS04245 824369..824560 - 192 WP_001296140.1 YebW family protein -
RG25_RS04250 824665..824901 - 237 WP_001295499.1 DUF1480 family protein -
RG25_RS04255 825019..826458 - 1440 WP_000057022.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T50390 NZ_CP010117:823474-823577 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT50390 NZ_CP010117:c823615-823344 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References