Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1241917..1242011 | Replicon | chromosome |
| Accession | NZ_CP010067 | ||
| Organism | Yersinia pseudotuberculosis str. PA3606 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1241917..1242010 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1241917..1242011 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BZ19_RS05565 | 1237435..1238385 | + | 951 | WP_011192157.1 | prolyl aminopeptidase | - |
| BZ19_RS05570 | 1238445..1238675 | - | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| BZ19_RS05575 | 1239076..1239585 | + | 510 | WP_002211092.1 | non-heme ferritin | - |
| BZ19_RS24120 | 1239646..1239822 | - | 177 | WP_158499692.1 | hypothetical protein | - |
| BZ19_RS05580 | 1240036..1240422 | + | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| BZ19_RS05585 | 1240425..1241309 | + | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
| BZ19_RS05590 | 1241406..1241747 | + | 342 | WP_042659507.1 | YebY family protein | - |
| - | 1241917..1242010 | + | 94 | - | - | Toxin |
| - | 1241917..1242011 | - | 95 | - | - | Antitoxin |
| BZ19_RS05600 | 1242270..1242596 | - | 327 | WP_002211097.1 | DUF1493 family protein | - |
| BZ19_RS05605 | 1242590..1243048 | - | 459 | WP_002211098.1 | hypothetical protein | - |
| BZ19_RS05610 | 1243704..1244864 | + | 1161 | WP_002211099.1 | flagellar type III secretion system protein FlhB | - |
| BZ19_RS05615 | 1244864..1246942 | + | 2079 | WP_012413652.1 | flagellar biosynthesis protein FlhA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T50327 NZ_CP010067:1241917-1242010 [Yersinia pseudotuberculosis str. PA3606]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT50327 NZ_CP010067:c1242011-1241917 [Yersinia pseudotuberculosis str. PA3606]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
