Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 781452..781546 Replicon chromosome
Accession NZ_CP010023
Organism Yersinia pestis str. Pestoides B

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 781453..781546 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 781452..781546 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CH60_RS04925 776645..778723 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
CH60_RS04930 778723..779883 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
CH60_RS04935 780415..780873 + 459 WP_002211098.1 hypothetical protein -
CH60_RS04940 780867..781193 + 327 WP_002211097.1 DUF1493 family protein -
- 781452..781546 + 95 - - Antitoxin
- 781453..781546 - 94 - - Toxin
CH60_RS04950 781716..782057 - 342 WP_002211095.1 YebY family protein -
CH60_RS04955 782154..783038 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
CH60_RS04960 783041..783427 - 387 WP_002211093.1 CopC domain-containing protein YobA -
CH60_RS04965 783842..784351 - 510 WP_002211092.1 non-heme ferritin -
CH60_RS04970 784752..784982 + 231 WP_002211091.1 DNA polymerase III subunit theta -
CH60_RS04975 785042..785992 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T50255 NZ_CP010023:c781546-781453 [Yersinia pestis str. Pestoides B]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT50255 NZ_CP010023:781452-781546 [Yersinia pestis str. Pestoides B]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References